String Graph with Ferragina–Manzini Index (Simpson, Durbin) (De Novo Genome Assembly De Novo Genome Assembly)

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Time Complexity

$O(n)$

Space Complexity

$O(n)$? words

(Requires computing O(n) overlaps for graph; data structures are otherwise linear in space usage)

Description

Approximate?

Exact

Randomized?

No, deterministic

Model of Computation

Word RAM

Year

2010

Reference

https://www.ncbi.nlm.nih.gov/pmc/articles/PMC2881401/pdf/btq217.pdf

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