Multiple Local Alignment (Local Alignment)
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Description
Given $k$ input strings and a scoring function on pairs of letters, one is asked to find the substrings of the $k$ input strings that are most similar under the scoring function.
Related Problems
Generalizations: Local Alignment
Parameters
$k$: number of input strings
$n$: length of input strings
Table of Algorithms
Currently no algorithms in our database for the given problem.
Reductions FROM Problem
| Problem | Implication | Year | Citation | Reduction |
|---|---|---|---|---|
| CNF-SAT | if: to-time: $N^{k-\epsilon}$ for some $\epsilon > {0}$ on $k$ binary strings of length $n$ with $k$-wise scoring then: from-time: ${2}^{(n-\epsilon')}$ for some $\epsilon' > {0}$ |
2014 | https://link.springer.com/chapter/10.1007/978-3-662-43948-7_4 | link |