Helden Oligo-Analysis (Motif Search Motif Search)

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Revision as of 09:49, 10 April 2023 by Admin (talk | contribs) (Created page with "== Time Complexity == $O(mn)$ == Space Complexity == $O(m)$ words (Derived: store number of occurances for each motif of a specified length) == Description == Uses oligonucleotides? Also only detects "short" motifs, and used for yeast == Approximate? == Exact == Randomized? == No, deterministic == Model of Computation == Word RAM == Year == 1998 == Reference == https://www.ncbi.nlm.nih.gov/pubmed/9719638")

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Time Complexity

$O(mn)$

Space Complexity

$O(m)$ words

(Derived: store number of occurances for each motif of a specified length)

Description

Uses oligonucleotides? Also only detects "short" motifs, and used for yeast

Approximate?

Exact

Randomized?

No, deterministic

Model of Computation

Word RAM

Year

1998

Reference

https://www.ncbi.nlm.nih.gov/pubmed/9719638

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