Helden Oligo-Analysis ( Motif Search)
Revision as of 10:53, 15 February 2023 by Admin (talk | contribs) (Created page with "== Time Complexity == $O(nm)$ == Space Complexity == $O(m)$ words (Derived: store number of occurances for each motif of a specified length) == Description == Uses oligonucleotides? Also only detects "short" motifs, and used for yeast == Approximate? == Exact == Randomized? == No, deterministic == Model of Computation == Word RAM == Year == 1998 == Reference == https://www.ncbi.nlm.nih.gov/pubmed/9719638")
Time Complexity
$O(nm)$
Space Complexity
$O(m)$ words
(Derived: store number of occurances for each motif of a specified length)
Description
Uses oligonucleotides? Also only detects "short" motifs, and used for yeast
Approximate?
Exact
Randomized?
No, deterministic
Model of Computation
Word RAM
Year
1998